Update manual.md

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@ -13,6 +13,7 @@ cli v2 manual
+ [Values from the Environment](#values-from-the-environment)
+ [Values from files](#values-from-files)
+ [Values from alternate input sources (YAML, TOML, and others)](#values-from-alternate-input-sources-yaml-toml-and-others)
+ [Required flags](#required)
+ [Default Values for help output](#default-values-for-help-output)
+ [Precedence](#precedence)
* [Subcommands](#subcommands)

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